Blog/Income Tax & Compliance

September 2026 Tax Deadlines for Businesses: Tax Audit Report, Advance Tax, TDS and GST Checklist

Hari Priya Kurada
September 22, 2026
12 min read
Updated: September 22, 2026
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September 2026 checklist for businesses: tax audit report due 30 September, advance tax second instalment, TDS Forms 138 and 140, GST and October dates.

Racing the 30 September Audit Deadline?. Talk to a qualified CA at Tax Garden, Hyderabad.

Looking for expert help with Tax audit and compliance help? The team at Tax Garden, based in Kondapur, Hyderabad, helps Indian SMEs stay compliant. End-to-end filings, notices, and deadline tracking, all in one place.

Key points

  • The tax audit report under Section 44AB for FY 2025-26 is due 30 September 2026. As of 21 September 2026, CBDT had not extended it.
  • The second advance tax instalment for tax year 2026-27 was due 15 September 2026. A shortfall costs 1% per month for a fixed 3 months under Section 425 of the Income-tax Act, 2025.
  • TDS deducted in September is due by 7 October 2026. The Q2 TDS and TCS statements (Forms 138, 140, 144 and 143) are due by 31 October 2026.
  • The ITR for audit cases (AY 2026-27) is due 31 October 2026.
  • DIR-3 KYC is no longer a September deadline. It is now due once every three years by 30 June.

September is the busiest compliance month for audited businesses. The audit report is due, the second advance tax instalment has just passed, quarterly TDS statements are being prepared, and the ITR for audit cases is due a month later.

One point to keep straight: FY 2025-26 (AY 2026-27) is still governed by the Income-tax Act, 1961, so the tax audit and the ITR follow Section 44AB and the old forms. Transactions from 1 April 2026 (tax year 2026-27) fall under the Income-tax Act, 2025, so advance tax, TDS and TCS for this year use new section numbers and new forms.

The September to October 2026 Calendar

DateComplianceWho
15 September 2026Advance tax, 2nd instalment (45% cumulative)Taxpayers whose tax for the year is Rs 10,000 or more (presumptive taxpayers excepted)
30 September 2026Tax audit report (Form 3CA/3CB with 3CD), FY 2025-26Businesses and professionals above the Section 44AB limits
7 October 2026TDS/TCS deposit for SeptemberAll deductors and collectors
11 October 2026GSTR-1 for September (monthly filers)GST-registered, monthly
13 October 2026GSTR-1 for July to September (QRMP)GST-registered, quarterly
20 October 2026GSTR-3B for September (monthly filers)GST-registered, monthly
22 or 24 October 2026GSTR-3B for July to September (QRMP, by state)GST-registered, quarterly
31 October 2026ITR for audit cases (AY 2026-27)Audited businesses, companies, working partners of audited firms
31 October 2026Q2 TDS/TCS statements: Forms 138, 140, 144, 143All deductors and collectors
31 October 2026Tax audit report and Form 3CEB for transfer pricing casesBusinesses with international or specified domestic transactions

Verify the current dates on incometax.gov.in and gst.gov.in before acting. Deadlines can be extended by notification.

Tax Audit: What Must Be Done Before 30 September

The audit report in Form 3CA or 3CB, with the statement of particulars in Form 3CD, must be uploaded by the auditor and accepted by you on the e-Filing portal by 30 September 2026.

Who needs a tax audit for FY 2025-26

CategoryAudit required if
BusinessTurnover above Rs 1 crore
Business with cash of 5% or less (cash receipts and cash payments each within 5% of the total)Turnover above Rs 10 crore
ProfessionGross receipts above Rs 50 lakh
Presumptive scheme (44AD, 44ADA, 44AE)Income declared below the prescribed rate and total income above the basic exemption limit (plus, for 44AD, the opt-out rule in Section 44AD(4))

Source: Section 44AB, Income-tax Act, 1961. More detail in our Section 44AB thresholds guide.

The Rs 75 lakh figure you may have seen for professionals is the Section 44ADA presumptive limit, not the audit threshold.

The audit report forms

FormUsed when
Form 3CAAccounts are already audited under another law (for example, a company under the Companies Act)
Form 3CBAccounts are not audited under any other law
Form 3CDStatement of particulars (44 clauses), filed with 3CA or 3CB

Form 3CD covers items such as depreciation, related-party payments, TDS compliance, loans and deposits taken or repaid in cash, Section 43B payments and disallowances.

Tax Audit Preparation Checklist

Step-by-Step Guide

Tax Audit Preparation Checklist

Finish these before the auditor signs

1

Close the books

Post all entries, pass year-end provisions, and tally the trial balance. Freeze FY 2025-26 once the auditor starts.

Books
2

Reconcile every bank account

Match each bank statement to the ledger and prepare a bank reconciliation for 31 March 2026.

Bank
3

Reconcile GST with books

Match GSTR-1 to the sales register, GSTR-3B liability to GSTR-1, and ITC claimed to GSTR-2B and the purchase register. Explain every difference.

GST
4

Reconcile TDS

Check that TDS you deducted was deposited and reported, and that TDS deducted by your customers appears in Form 26AS. Chase customers for missing credits.

TDS
5

Check AIS and TIS

Download AIS for FY 2025-26 and compare interest, dividends, sales, purchases and property transactions with your books. Submit feedback on wrong entries.

AIS
6

Prepare Form 3CD schedules

Depreciation chart, related-party payments, loans and deposits, TDS defaults, Section 43B payments, MSME dues and disallowances.

3CD
7

Review pending notices

Check e-Proceedings on the income tax portal and notices on the GST portal, so pending demands can be reported correctly.

Notices
8

Upload and accept

The auditor uploads Form 3CA/3CB-3CD. You accept it from your own login by 30 September and download the acknowledgment.

File

Source: Income-tax Act, 1961, Section 44AB; ICAI Guidance Note on Tax Audit

Get it right before signing. Rule 6G of the 1961 Rules allows a revised audit report only in limited cases, so mismatches found later cannot always be fixed by revising.

Advance Tax: The 15 September Instalment

Advance tax for tax year 2026-27 falls under the Income-tax Act, 2025.

InstalmentDue dateCumulative amount
1st15 June 202615%
2nd15 September 202645%
3rd15 December 202675%
4th15 March 2027100%

If you paid less than required by 15 September

Under Section 425 of the Income-tax Act, 2025 (Section 234C of the 1961 Act):

  • No interest if you paid at least 36% of your tax by 15 September.
  • Otherwise, interest is 1% per month for a fixed 3 months on the shortfall against 45%.

Example: tax for the year Rs 20 lakh. Required by 15 September: 45% = Rs 9 lakh. You paid Rs 4 lakh (20%, below 36%). Shortfall Rs 5 lakh x 1% x 3 = Rs 15,000.

Because the 3-month period is fixed, paying the shortfall on 20 September does not reduce this Rs 15,000. It does reduce the shortfall tested on 15 December, which protects you from further Section 425 interest. Details in our 234B and 234C interest guide.

Presumptive taxpayers

If you use the presumptive schemes for business or profession (formerly Sections 44AD and 44ADA), you can pay all advance tax in one instalment by 15 March 2027.

TDS and TCS: September and October

Monthly deposit

Tax deducted or collected in September 2026 is due by 7 October 2026. Late deposit attracts interest of 1.5% per month or part of a month from the date of deduction under Section 398 of the Income-tax Act, 2025 (Section 201(1A) of the 1961 Act).

Q2 statements (July to September 2026)

From tax year 2026-27, the old forms have been renumbered under the Income-tax Rules, 2026:

New formOld formCoversDue date
Form 13824QTDS on salary31 October 2026
Form 14026QTDS on other payments to residents31 October 2026
Form 14427QTDS on payments to non-residents31 October 2026
Form 14327EQTCS31 October 2026

The TCS statement used to be due on the 15th. In Form 143 it now follows the TDS calendar and is due on the 31st.

A late statement attracts a fee of Rs 200 per day, capped at the TDS amount, under Section 427 of the 2025 Act (Section 234E of the 1961 Act).

Before filing the Q2 statement

  1. Match TDS deducted with challans deposited.
  2. Check deductee PANs are valid, since an inoperative PAN can mean a higher rate.
  3. Use the right Section 393 payment code. For example, contractor payments (old 194C) are Section 393(1) Sl. 6(i), payment code 1023 for individuals and HUFs and 1024 for others. See our Section 393 code guide.
  4. Apply lower or nil deduction certificates correctly. From 1 April 2026 these are applied for in Form 128 (formerly Form 13) under Section 395.

GST Reconciliation Before the Audit

CheckWhat to match
GSTR-1 vs sales registerEvery invoice, credit note and amendment
GSTR-3B vs GSTR-1Output tax declared vs output tax reported
GSTR-2B vs purchase registerITC claimed is supported by supplier filings
E-invoices vs GSTR-1IRN invoices appear in B2B supplies
E-way bills vs GSTR-1Movements match reported supplies

About IMS: the Invoice Management System is optional. Invoices you do not act on are deemed accepted when GSTR-2B is generated. Use it to reject or keep pending invoices you dispute before filing GSTR-3B.

AIS and Form 26AS

StatementWhat to check
AISInterest, dividends, securities and property transactions, GST turnover, foreign remittances
TISSummary values used to pre-fill the ITR
Form 26ASTDS and TCS credits, advance and self-assessment tax paid

If AIS shows a wrong or duplicate entry, submit feedback on the e-Filing portal and file your ITR with the correct figures. Keep the evidence, as the correction by the reporting entity can take time.

Common Mistakes in September

MistakeConsequenceHow to avoid
Signing the audit report with unreconciled GSTWrong 3CD reporting; revision may not be possibleFinish GST reconciliation before signing
Not deducting or not paying TDS on expenses30% of the expense disallowed under Section 40(a)(ia) (residents)Review TDS on every expense head before year-end figures are final
Missing TDS credits in Form 26ASCredit not given in the ITRReconcile 26AS and chase customers
Short advance tax on 15 SeptemberSection 425 interest, 1% x 3 monthsPay before 15 December to limit further interest
Ignoring AIS mismatchesAdjustment or notice after processingReconcile and give feedback
Late TDS deposit1.5% per month under Section 398Deposit by 7 October
Auditor uploads, taxpayer forgets to acceptReport treated as not furnishedAccept from your login by 30 September

Key Dates at a Glance

ItemDate
Advance tax, 2nd instalment15 September 2026 (45%)
Tax audit report, FY 2025-2630 September 2026
TDS/TCS deposit for September7 October 2026
GSTR-1 / GSTR-3B for September (monthly)11 / 20 October 2026
ITR for audit cases, AY 2026-2731 October 2026
Q2 Forms 138, 140, 144, 14331 October 2026
Transfer pricing audit and Form 3CEB31 October 2026
Penalty for late audit reportSection 271B: lower of 0.5% of turnover or Rs 1.5 lakh (details)
DIR-3 KYCNot in September: every 3 years by 30 June (details)

For the full year, see our FY 2026-27 compliance calendar.

How Tax Garden Can Help

September is when books, GST, TDS and advance tax all have to line up. Tax Garden can help you:

  • Close FY 2025-26 books and prepare the trial balance and 3CD schedules for your auditor
  • Reconcile GSTR-1, GSTR-3B and GSTR-2B with your books
  • Match TDS with Form 26AS and AIS
  • Work out the advance tax you owe and pay the next instalment
  • Deposit September TDS and file the Q2 statements in Forms 138, 140, 144 and 143
  • File the ITR for audit cases by 31 October 2026

Sources: Income-tax Act, 1961 (Sections 44AB, 40(a)(ia), 271B, 273B; Rule 6G); Income-tax Act, 2025 (Sections 393, 395, 398, 425, 427); Income-tax Rules, 2026 (Forms 128, 138, 140, 143, 144); Companies (Appointment and Qualification of Directors) Rules, Rule 12A as substituted by G.S.R. 943(E); GST portal (gst.gov.in). Verify current dates on incometax.gov.in before acting. This article is general information, not professional advice.

Frequently Asked Questions

What is the tax audit report due date for AY 2026-27?

The tax audit report under Section 44AB of the Income-tax Act, 1961 for FY 2025-26 (AY 2026-27) is due by 30 September 2026, one month before the 31 October ITR due date for audit cases. As of 21 September 2026, CBDT had not extended it. Transfer pricing cases file the audit report and Form 3CEB by 31 October 2026.

Who needs a tax audit for FY 2025-26?

A business needs an audit if turnover exceeds Rs 1 crore. The limit is Rs 10 crore if cash receipts and cash payments each do not exceed 5% of the total. A professional needs an audit if gross receipts exceed Rs 50 lakh. Presumptive taxpayers who declare income below the prescribed rate and whose income exceeds the basic exemption limit may also need an audit.

What if I missed the 15 September 2026 advance tax instalment?

If you paid less than 36% of your tax by 15 September 2026, interest under Section 425 of the Income-tax Act, 2025 (Section 234C of the 1961 Act) is 1% per month for a fixed 3 months on the shortfall against 45%. The period is fixed, so paying late does not reduce it, but paying before 15 December reduces the shortfall for the third instalment.

When is TDS for September 2026 due?

Tax deducted in September 2026 must be deposited by 7 October 2026. Late deposit attracts interest at 1.5% per month or part of a month from the date of deduction under Section 398 of the Income-tax Act, 2025 (Section 201(1A) of the 1961 Act).

Which TDS return forms are due on 31 October 2026?

For the July to September 2026 quarter, file Form 138 (salary, formerly 24Q), Form 140 (resident non-salary, formerly 26Q), Form 144 (non-residents, formerly 27Q) and Form 143 (TCS, formerly 27EQ). All four are due by 31 October 2026.

Is DIR-3 KYC due on 30 September 2026?

No. Rule 12A as substituted by G.S.R. 943(E) (effective 31 March 2026) moved DIR-3 KYC to once every three financial years, due by 30 June. Directors who completed KYC under the old annual rule file next by 30 June 2028. File within 30 days only if your mobile number, email or address changes.

What is the penalty for missing the tax audit deadline?

Under Section 271B of the Income-tax Act, 1961, the penalty is 0.5% of turnover or gross receipts, or Rs 1.5 lakh, whichever is lower. Under Section 273B no penalty is imposed if you show reasonable cause for the delay. File the report as soon as possible even after the due date.

Is the Invoice Management System (IMS) mandatory for GST?

No. Acting on invoices in IMS is optional. Invoices you do not act on are deemed accepted when GSTR-2B is generated. Use IMS to reject or keep pending invoices you dispute before filing GSTR-3B.

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